SE2820635

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9640
  • Sorghum bicolor
  • SE2820635
  • Mutator
  • M15
  • chromosome_7:16035526-16036089
  • TTTTAAGTA
  • TTTAAGTAGGGAGAATTGGCTGTGAGACATGTAGAATGGTGGCCATTTGCCAGTGGACACTATGAAAAATTAGATTGCTCAAAGGCACTGCGTTTCTTGTCAAATTTGCTAGCGGACACTACGTCTAATCAAACATTATTACAAAATAGATATAAAATCATATAAGTGCTAGAAAATTATACTATAATTTTTTTACACTCTACATGATGAGAACTATAGTGTAAAAATATTGTTTAGTATT

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T                 A                  C       A          T                C         G                                                         A                              A                    C                                   A     ---T      TCTTACTAATATATTAACTAATTAACCATGA
  TTTAAG AGGGAGAATTGGCTGTG GACATGTAGAATGGTGGC ATTTGCC GTGGACACTA GAAAAATTAGATTGCT AAAGGCACT CGTTTCTTGTCAAATTTGCTAGCGGACACTACGTCTAATCAAACATTATTACAAAAT GATATAAAATCATATAAGTGCTAGAAAATT TACTATAATTTTTTTACACT TACATGATGAGAACTATAGTGTAAAAATATTGTTT GTATT    TTAGTA                               
  |||||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    ||||||                               T
  GAATTT TCCCTCTTAACCGACAC CTGTACGTCTTATCACCG TAAACGG CGCCTGTGAT TTTTTTAATCTAACGA TTTCTGTGA GCAAAGAACAGTTTAAACGATCGCCTGTGATGCAGATTAGTTTGTAATAATGTTTTA CTATATTTTAGTATATTCACGATCTTTTAA ATGATATTAAAAAAATGTGA ATGTATTACTCTTGATATCACATTTTTATAACAAA CGTGA    ATTGGT                               
AT      -                 C                  A       C          C                A         A                                                         C                              A                    C                                   A     CTTT      AAAGCGGGGAGAAGTATTTATCTGTTTCTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End