SE2830636

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9641
  • Sorghum bicolor
  • SE2830636
  • hAT
  • Hat19
  • chromosome_2:73496497-73497149
  • GAAGCGAG
  • GCGAGCAGGGCCGTCTCT

Secondary structure and sequence

TSD    TIR
5'



3'
GAA  GAG         C   --A       GA   CC TTGTGCAAGCAAAAGAGTAAGGGCCCATAAATTTTTTTTGATATGTCAAATATATAAAATATATAGTACAACTAAAAAGAATTAATTTGCACCATATGTTTTAGTTTATAAAAGGTAATTATAGTACAACAAAAAAAATAAATAGAATAGAATTAGAAATTTAGAACCCTATCACGAAATACTAATAACAAAATTGGTGAAGTCTCGATGAGTCATGCCCTTACTCTTCCTGCTCCAGTGTCTAGTAGTGACATCGTGTGCGGACGTGTGGTGTTACGTGTCATGGAGCC
   GC   CAGGGCCGT TCT   TAATTTT  GGA  C                                                                                                                                                                                                                                                                                                  
   ||   ||||||||| |||   |||||||  |||  |                                                                                                                                                                                                                                                                                                  A
   CG   GTCCCGGCA AGA   CACCCGT  CGG  C                                                                                                                                                                                                                                                                                                  
GAG  AAG         C   CAA       --   -- CACGCTGCCGGTCCCGGGTGCCACGATTTTCCGGATATTTATATATATATTTATATATATACATTATATATATTATAAATCATATATATAAATAAATTAAAAAATCTCCGAATATGTTTGTGATATTTTTAAGCAATTAATTAAATTTTTTTTAAATAATTAGTCGTCCAGTAGGTGTAGGTGGATAACGATCACAACGAAGTATAAGAGCGAACTAGCTAATCAACTCGTTTAGTTACAAAGAGAAATAGCAGAAGAGCAGGATAACGGTTAGCAGGTTACGTTGTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End