SE2850641

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9646
  • Sorghum bicolor
  • SE2850641
  • PIF/harbinger
  • To3
  • chromosome_7:10446043-10446745
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               CCG      GAAAA     C         T                  AC       ATC             A     A          C        A       C        A            A       A  T           C           A   G                          AC       TTTTCAGGGTG               T        C          AGGTTT      ACTG ----     ---  T   TTTT   T     ACATTGTTCAATCACGAAGTAACTAGGCTCAAAAGATTCATCTCACAAATTAC
  AGGCCTTGTTTAGTT   AAAAGT     GTTTT GGTACTGTA CACTTTCGTTTGTTTGTG  AAATATT   CAATCATGGACTA TTAGG TCAAAAGATT GTCTCATG TTTACAG TAAACTGT TAATTAGTTTTT TTTTCGT TA ATTTAATGTTT ATGCATGTGTC CAA ATTCGATGTGACGGAGAATCTTGAAA  TTTTTGG           AACTAAACAAGGCCT GTTTAGTT GCAAAAATTT      TTGGCT    T    AGTAC   TT CGT    ATT GACAA                                                     
  |||||||||||||||   ||||||     ||||| ||||||||| ||||||||||||||||||  |||||||   ||||||||||||| ||||| |||||||||| |||||||| ||||||| |||||||| |||||||||||| ||||||| || ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||  |||||||           ||||||||||||||| |||||||| ||||||||||      ||||||    |    |||||   || |||    ||| |||||                                                      
  TCCGGAACAAATCAA   TTTTTA     TAAAA CCATGACAT GTGAAGGCAAACAAACAC  TTTATAA   GTTAGTATTTGAT AATCC AGTTTTCTAA TAGAGTGC AAATGTC GTTTGACA ATTAATCAAAAA AAAAGCA AT TAAATTATGAG TACGTATATGG GTT TAAGCTACACTGCCTCTTAGAACTTT  AAAAACC           TTGATTTGTTCTGGA CAAATCAA CGTTTTTAAA      TTCTAA    G    AGTGT   TT AGA    AAT AGCGT                                                     
AA               CCG      AAATC     C         C                  CA       CAA             A     C          A        C       T        C            C       A  T           T           C   A                          -A       -----------               -        A          ----AG      ---- GGAC     AGC  -   ----   C     ACGTATCTCGTAATTTATATCTGCTTTTATTTTTGATTAACGTGTCAAATGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End