SE2850645

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9650
  • Sorghum bicolor
  • SE2850645
  • PIF/harbinger
  • To76
  • chromosome_9:2794610-2794889
  • TTA
  • AGGCCTTGTTCGGCTGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            --GCT   A     AT    TATCCAGACTAGGATTAAGTGGCCACTAAACCGGACCGTCGGTCAGGTTTCGTTCCGGACCTATAGGGTTCCGATTTTATTCCAGGTTGAATTGAGAGGAAAATGATC
  AGGCCTTGTTCG     GCC GGCCC  ATCC                                                                                                            
  ||||||||||||     ||| |||||  ||||                                                                                                            C
  TCCGGAACAAGC     CGG CCTTG  CCGG                                                                                                            
AT            AAAAC   -     --    GCTTTAGACCGAGCAAGGTAGGTCTAACTTATACGGGCCAAGGTTCAGTCTGGCCTAGTTCTTAACGACAAGCCAATCTAAACCAGGCATAGCTTTTGACTAGTTAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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