Plant MITE

SE2850651

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9656
Sorghum bicolor
SE2850651
PIF/harbinger
To2
chromosome_4:54608236-54608484
TTA
AGGCCTTGTTTAGTTCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 -    T            CGACAC  T     TTTC      --   T   AAATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACC
  AGGCCTTGTTTAGTTCC AAAA ATTTTGCAAAAT      TG AGCTT    GTTTGT  ATT GAT                                                           
  ||||||||||||||||| |||| ||||||||||||      || |||||    ||||||  ||| |||                                                            
  TCCGGAACAAATCAAGG TTTT TAAAACGTTTTA      TC TAAGA    GGCAGT  AGC TAG                                                           
AT                 G    T            -AAAAG  -     ----      GT   T   AAATCTGTGTACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGGCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850651

TTAGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATCGACACTGTAGCTTTTTCGTTTGTATTTGATAAATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACCAAACGGTGCAATTAGTTTTTATTTTTGTCTATATTTAATACTTCATGCATGTGTCTAAAGATTCGATGTGACGGAGAATCTGAAAAATTTTGCAAAATTTTTTGGGAACTAAACAAGGCCTTA

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