SE2830655

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9660
  • Sorghum bicolor
  • SE2830655
  • hAT
  • Hat37
  • chromosome_2:18962628-18963332
  • CTCTCCAC
  • TAAAGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTCCAC           ----       ATTACCCACTGGGTATATGCTACCCATACCCTTACCCATGAGAAAATATTTTACCCGTTAATTTACCCATACCCATGTACGGGTAAGAGTTTTTTTTCCATATCCTTACCCACGCGGGTAACGGGTAACCCATGGGTTATCCTTACCCATGATTCCAAGAATACTTGTAAAAAATAAATACATATTTAAATATTTCAGGCTTCCAATTTCAACCAAAGCATCACAAGTCATTAATAAAATCGTCAAATATACGAGCTCTATGAATACCTGATCAAGTAATCTAATAGATAAATCCACCATTACTAGATAACAAGTGGCAAAATT
        TAAAGATGGCA    ATGGGTA                                                                                                                                                                                                                                                                                                                                    
        |||||||||||    |||||||                                                                                                                                                                                                                                                                                                                                    C
        ATTTCTACCGT    AATGGGT                                                                                                                                                                                                                                                                                                                                    
CACCTCTC           TAAA       TTTGGACTACCCATTAATGGAATAATCGCATTTCCATACCGATTAAAAAAGTGGGTACCCATTCTATTACCTTTTTTCGAAATGGGTCGCCCATTTCGCCCATTCCCATACCCTGAGATAACGGGTATGGGCAATTGGGTACCCATTAAAATTGGGCTAAGTTATTCAATCTTAGTACCCGGTTTTAGTGGTATGTGTTGGGTTCAGGTTATTTTTAGTATATATTACAACAGTTTGGTATCCGGGAGTGGAATCATGGAGTGAGTAGGCGAGGGAGGGGAAAGGGGATAGAGGAACATCGCCGGTGTGTTGTACCCTTGAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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