SE2820656

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9661
  • Sorghum bicolor
  • SE2820656
  • Mutator
  • M6
  • chromosome_1:49410127-49410864
  • TTTAAACAT
  • GAGTAAAATACACTAGCGGCCCTTTAACTTGTCAGCCTGTACCACTTTGGTCCATGAACTTGCAAACCCGAAAAAGTGACCTCTGAACTTGTCCGTCTGTGCCACTTTGGTCCATGAACTTGCAAACGCAAAACAGTGGCCTCTGAACTTGTCGGCCTGTGCCACTTTGGTCCATAAACGTGTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAAACAT              A     C      C     A   -   A                          C        T A              C  C              C   G             A   C    G                 C                  A          GGATCTTTC     GTCAACAAATATTTATT    --    AACTAATTATTAATGAAATGCTAAATTCATGAAATGTTTTGTGTAGCTTCTTCATGTGTACTCTGACTAGGAAAAATATGAAACCTAGAAAACGAATAATTTTTGCTTGTTTTAAAATTATCTCTTTTAATTAATAAATGCA
         GAGTAAAATACACT GCGGC CTTTAA TTGTC GCC TGT CCACTTTGGTCCATGAACTTGCAAAC CGAAAAAG G CCTCTGAACTTGTC GT TGTGCCACTTTGGT CAT AACTTGCAAACGC AAA AGTG CCTCTGAACTTGTCGGC TGTGCCACTTTGGTCCAT AACGTGTAAA         AACGC                 TATT  TCAT                                                                                                                                              
         |||||||||||||| ||||| |||||| ||||| ||| ||| |||||||||||||||||||||||||| |||||||| | |||||||||||||| || |||||||||||||| ||| ||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||         |||||                 ||||  ||||                                                                                                                                              A
         CTCATTTTATGTGG CGCCG GAAATT AACAG CGG ACA GGTGAAACCAGGTATTTGAACGTTTG GCTTTTTC C GGGGATTTGAACAG CG ACACGGTGAAACCA GTA TTGAACGTTTGCG TTT TCAC GGGGACTTGAACAGCTG ACACGGTGAAACCAGGTA TTGTACGTTT         TTGTG                 GCCG  GTGC                                                                                                                                              
TACAAATTT              C     A      C     -   T   C                          C        T C              T  T              A   A             C   T    G                 C                  C          ATGCTTTTA     -----------------    AC    CGTGACAAGACGGTGCACCGGCGGAGACCATCTGGTACGTACCGTGGCAAATACCACGACTGCAGTCGTGAAGAAAAATTTAAATGCTTTAACTATATAAAAATAAGCATCGCAGTTTATATAGTTTATTATATAGTTAAGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End