SE2810663

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9668
  • Sorghum bicolor
  • SE2810663
  • Tc1/Mariner
  • St30
  • chromosome_1:20669220-20669502
  • TA
  • TACTCCCTCCGTCCATTTATCTCCATCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
            C           A      TA         GCAATGACCAAAGAGCAGAGCAAAAGCTCTCACTTTACATTTAATCATCTCAGGCTGGACATACATGAGTCACAGGCAAGAAACAACCAATGAGCAGCAA
TACTCCCTCCGT CATTTATCTCC TCGTTT  GCCTTTGGT                                                                                                    
|||||||||||| ||||||||||| ||||||  |||||||||                                                                                                    A
ATGAGGGAGGTA GTAAATAGAGG AGTAGA  TTCGTTTTT                                                                                                    
            A           A      --         GAAAAATAATTTTTTAGAGGAAGTATAATCGAACTCTGAACGGATGTAAATAACGGGGAAACGACGAGTAACCGATGGTGAACGGACATAAATAACGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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