SE2850667

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9672
  • Sorghum bicolor
  • SE2850667
  • PIF/harbinger
  • To82
  • chromosome_3:57007049-57007815
  • CAA
  • AGAGTTTGCCAAATGAGATTGCTATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAAAAAACATAC     -TTG    AT   A        CTTAAAA       AAA    GAAATTGTAGTCTCCAACAGATTGGTAAATCAACTTGGTAATTTTAGCAAGTTGCCATCCTTCCCCTCCGCACGCGCATATATGCGCGCGCGTATCGACCGCGCATCGTAGCATCGCGTGCCGTAGCGGCTCCTTCCCGCGCGCCCGAGGAAACTTCGTCGTCTTCCTCCCGCGAGATCGGATCCGCACACAGCCATCTGGTTCACGCGCGTAGGGCCGGCCTCCTCCTCGACGGCTGTTGCGTGAACCATCTCATCAATTCATGGCGCAAGGCCGGCCTCCTCCCCAACGGCTGCTGCGTGAGTCATCTCATCAGTTCACGCGCGCACGGC
              AGAGT    CCAA  GAG TTGCTATT       ATTTAGC   ACAA                                                                                                                                                                                                                                                                                                                                            
              |||||    ||||  ||| ||||||||       |||||||   ||||                                                                                                                                                                                                                                                                                                                                             
              TCTCG    GGTT  CTC AACGATAA       TGAATCG   TTTA                                                                                                                                                                                                                                                                                                                                            
            AC     TAGA    --   A        ---AAAA       ---    GAACACAAAACGGTTGAGGATTTTGTTTTATGGTTCATTTTTTTCTCTGGTAAAGGTTCTCAAACGATAAGAACTGAACGGTATTGGTTTTTATCTTCCGGGTGTTCTAAAAAAAAATGGCTAGTCCGACAACAGCGTCTTAGTCGTTCTAACTACGGCGGCGGCGCAGCAGGAAGGATACGACGTGCACTTCCAAGGGAGAGGGTCGTTAATAGAGGTGGCGGCCGGTAGAGGAGTTCGTCGGTGCATGAACTGACCTAGTTCCCGTGGTGCGTCGTGGACTAACCTAGTTCCCGTGGTGCGTCGTCCTCCTCAGCAGCCTCGTTTCCGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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