SE2850671

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9676
  • Sorghum bicolor
  • SE2850671
  • PIF/harbinger
  • To2
  • chromosome_2:4143014-4143262
  • TTA
  • AGGCCTTGTTTAGTTCCGAAAAATTTTGGGAAATGGACAC

Secondary structure and sequence

TSD    TIR
5'



3'
TT            G  C -GA         G     -GGA   TGTAGCACTTTC         T    - ATATTGTCCAATCATGAACTAACTAGACTCAAAAGATTCGTCTCGTCAATTTCGACCAA
  AGGCCTTGTTTA TT C   AAAATTTTG GAAAT    CAC            GTTTGTATT GACA A                                                           
  |||||||||||| || |   ||||||||| |||||    |||            ||||||||| |||| |                                                           A
  TCCGGAACAAAT AA G   TTTTAAAAC TTTTA    GTG            AGAGGCAGT GTAG T                                                           
AT            G  A ATC         G     AAAA   ----------TA         -    C TAGAAATCTGCGTACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAATGTGTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End