Plant MITE

SE2810675

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9680
Sorghum bicolor
SE2810675
Tc1/Mariner
St4
chromosome_10:58686448-58686682
TA
TACTCCCTCCGTCCCATTAAAAGTGTCGTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

                  A               TACTTTTAA                  CA         AAAATTTTGT          TTTATTTTTGTTATGACTTATTTTATCATTAGAGA
TACTCCCTCCGTCCCATT AAAGTGTCGTTTTTT         ACTTCTTGTTTGATTGTT  TCTTATTCA          ATAAATATTA                                   
|||||||||||||||||| |||||||||||||||         ||||||||||||||||||  |||||||||          ||||||||||                                    
ATGAGGGAGGCAGGGTAA TTTCACAGCAAAAAA         TGAAGAACAAACTGGCAA  AGAGTAAGT          TAAAATAATA                                   
                  C               ---------                  AG         ----------          CGTTTATTATTTTATTTATTTAGTAATAATTTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810675

TACTCCCTCCGTCCCATTAAAAGTGTCGTTTTTTTACTTTTAAACTTCTTGTTTGATTGTTCATCTTATTCAAAAATTTTGTATAAATATTATTTATTTTTGTTATGACTTATTTTATCATTAGAGATACTTTAATAATGATTTATTTATTTTATTATTTGCATAATAAAATTGAATGAGAGAAACGGTCAAACAAGAAGTAAAAAACGACACTTTCAATGGGACGGAGGGAGTA

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