SE2860678

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9683
  • Sorghum bicolor
  • SE2860678
  • Micron
  • Mim1
  • chromosome_6:9681603-9681888
  • TATATAT
  • ATATATATATATATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
T                 CATACACACGGT  C                                        C    CAAAATTA    GAAAAAATACTGAGCAGTACTGAAGAGTGTTCAGTATCATCTTGTCCAACACTCAGGG
 ATATATATATATATATA            AG GCTATTCTACACCTTAGGTGTAGAATACTATTCTACACCG AAGT        AGTA                                                          
 |||||||||||||||||            || |||||||||||||||||||||||||||||||||||||||| ||||        ||||                                                          A
 TATATATATATATATAT            TC CGATAAGATGTGGGATCCACATCTTATGATAAGATGTGGC TTCA        TATG                                                          
                  ------------  A                                        -    -----CAA    ACTCGTTTTAAGTCATAGCAAGTCATAAGCACAAAGTCATAACAAGTCATAAAGCACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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