Plant MITE

SE2810679

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9684
Sorghum bicolor
SE2810679
Tc1/Mariner
St9
chromosome_1:60469529-60469794
TA
TACTCCCTCCATCCCAATTTATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAACAT

Secondary structure and sequence

TSD TIR

5'

3'

             C   TTT              C                    A   -CTCAA    T    CG     GAAAAAAT   A  G        C     A   A     CTATGAAAATATAAC
TACTCCCTCCATC CAA   ATTATAAGTCATTC AAGAATCTTGGAGAGTCAAA CAT      TTTG CCAA  TTATA        TAA AA ATTTATGA ATCAA TAG TATTA               
||||||||||||| |||   |||||||||||||| |||||||||||||||||||| |||      |||| ||||  |||||        ||| || |||||||| ||||| ||| |||||                
ATGAGGGAGGTAG GTT   TAATATTCAGTAAG TTCTTAGAACTTTTCAGTTT GTA      AAAC GGTT  AATAT        ATT TT TAAATACT TGGTT ATT ATAGT               
             A   ---              A                    C   AAATTC    T    AA     ACTATTGT   A  G        A     G   C     AATCCAAAAAGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810679

TACTCCCTCCATCCCAATTTATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAACATCTCAATTTGTCCAACGTTATAGAAAAAATTAAAAAGATTTATGACATCAAATAGATATTACTATGAAAATATAACTAATGAAAAACCTAATGATACTTAGTTGGTATCATAAATGTTATTATGTTATCATATAAAATTGGTCAAACTTAAAATGCTTTGACTTTTCAAGATTCTTAGAATGACTTATAATTTGAGATGGAGGGAGTA

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