Plant MITE

SE2850684

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9689
Sorghum bicolor
SE2850684
PIF/harbinger
To1
chromosome_3:8124160-8124408
ATA
GGCCTTGTTTAGAT

Secondary structure and sequence

TSD TIR

5'

3'

ATA              ACAC        -CCAAAACTTTA     ----   CCCATCACATCGAATCTTGCGGCGCATGCATAGAACATTAAATATAGATAAAAAATATAACTAATTGCACAGTTTA
   GGCCTTGTTTAGAT    CCAAAAAC            CAAGA    TTC                                                                            
   ||||||||||||||    ||||||||            |||||    |||                                                                             
   CCGGAACAAATCTA    GGTTTTTG            CTGTG    CGT                                                                            
ATA              ----        AAAAACCTAAAA     ACAT   GAAAGCAAAAATAAACTGTTTGTAATAGGTTAGTACCTCGTTGATCCGAATTTTCTAAGCAGAGCACTAAATGTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850684

ATAGGCCTTGTTTAGATACACCCAAAAACCCAAAACTTTACAAGATTCCCCATCACATCGAATCTTGCGGCGCATGCATAGAACATTAAATATAGATAAAAAATATAACTAATTGCACAGTTTACCTGTAAATCACGAGACGAATCTTTTAAGCCTAGTTGCTCCATGATTGGATAATGTTTGTCAAATAAAAACGAAAGTGCTACAGTGTCAAAATCCAAAAAGTTTTTGGATCTAAACAAGGCCATA

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