SE2850687

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9692
  • Sorghum bicolor
  • SE2850687
  • PIF/harbinger
  • To3
  • chromosome_3:19496864-19497112
  • TTG
  • GGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               CACCCCAAAATTCAAAAACTTTTCAAGATTTTCC   -  - TCAAATCTTGTGGCACATGCATGGAGCACTAAATATAGATGAAAACAAAAACCAATTGCACAGTTTGTCTGTA
  GGGCCTTGTTTAGTT                                  GTC AC A                                                                         
  |||||||||||||||                                  ||| || |                                                                          
  TCCGGAACAAATCAA                                  TGT AC T                                                                         
GT               -------------CACTTTTCAAAAACCTAAAAC   C  A CGTGAAAACAAACATAGACTGTTAATAACATGTTGATATCTGATTGATCCGAGTTTTCTAAGTAGAGCATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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