Plant MITE

SE2810688

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9693
Sorghum bicolor
SE2810688
Tc1/Mariner
St7
chromosome_4:66174116-66174378
TA
TACTCCCTCCGTATAGAATTTAGAAGTCGTTTAGGACAG

Secondary structure and sequence

TSD TIR

5'

3'

         C  A   A               A      CGACAC    TCCA     ------CAAC     CCTCT           ----  A ATTTAGGAAAAAATGATACATGTATACTTTTATGAAAGTATTTT
TACTCCCTC GT TAG ATTTAGAAGTCGTTT GGACAG      GGTC    AAACA          TTTGA     TATTTTTATAA    AA T                                            
||||||||| || ||| ||||||||||||||| ||||||      ||||    |||||          |||||     |||||||||||    || |                                             
ATGAGGGAG CA ATC TAAATCTTCAGCAAA CCTGTT      CCAG    TTTGT          TTTAG     AGTTATTGAAG    AA C                                            
         A  C   C               A      CCAAAC    ----     AACTCTTATA     ----T           ATTT  - AACTCAAACGTTTACACTTTTAATATACTTATCTAAACAGAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810688

TACTCCCTCCGTATAGAATTTAGAAGTCGTTTAGGACAGCGACACGGTCTCCAAAACACAACTTTGACCTCTTATTTTTATAAAAATATTTAGGAAAAAATGATACATGTATACTTTTATGAAAGTATTTTTCAAGACAAATCTATTCATATAATTTTCACATTTGCAAACTCAACAATTTAGAAGTTATTGATGATTTATATTCTCAATGTTTGACCCAAACCTTGTCCAAAACGACTTCTAAATCCTACACAGAGGGAGTA

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