SE2850690

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9695
  • Sorghum bicolor
  • SE2850690
  • PIF/harbinger
  • To2
  • chromosome_6:50790125-50790362
  • TAA
  • AGGCCTGGTTTAGTTGGTGAAAAATTTTGGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      G         G     -AA   T       GCTA    AG   TT   TTTG         AATATT   ---  ATAATAGACTAACTAGGGTCAAAAGATTCGTCTCGCGATTTAC
  AGGCCT GTTTAGTTG TGAAA   TTT GGATTTC    CTGT  CAC  TCG    TTTGTGGCA      GTC   TA                                           
  |||||| ||||||||| |||||   ||| |||||||    ||||  |||  |||    |||||||||      |||   ||                                           A
  TCCGGA CAAATCAAT GTTTT   AAG TCTAAAG    GGCA  GTG  AGC    GAACGCCGT      CGT   TC                                           
AA      A         G     AAA   T       ----    --   -T   -TTA         ---GTA   ACT  ATAATTTATATCTGTTTTTATTTTTGATTAATGTGTCAAACGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3