SE2850692

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9697
  • Sorghum bicolor
  • SE2850692
  • PIF/harbinger
  • To19
  • chromosome_1:65790050-65790265
  • TTA
  • AGGGGGTGTTTGGGACTGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                     CACAAACTC        AAA  CCATTGTGGAGCAGCTCTACAAAAAACTAGAGTTTGTGGAGTACCTCTTTAGGTGCTCTCACAACTCCA
  AGGGGGTGTTTGGGACTGCTC         TGCTCCAC   CT                                                                     
  |||||||||||||||||||||         ||||||||   ||                                                                      
  TCCCCCACAAACCCTGACGAG         ACGAGGTG   CA                                                                     
AT                     ---------        ---  AAAAGTGGAGGCGAGGTGCAAAAAATCGGTTTGCCAAAGTCGAGGTGCGTGAGTCAAGCTCTTTTTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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