SE2850693

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9698
  • Sorghum bicolor
  • SE2850693
  • PIF/harbinger
  • To3
  • chromosome_6:60147031-60147279
  • TTA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             --AT   -   ATATTTTGGATTTCGCTACTGTAGCATTTTCGTTTGTTTGTGGTAAATATTGTCCAATTATGGACTAACTAGGATCAAAAGATTCGTCTCACGATTTACA
  AGGCCTTGTTTAG    GCG AAA                                                                                                    
  |||||||||||||    ||| |||                                                                                                     
  TCCGGAACAAATC    GAG TTT                                                                                                    
AT             AAGT   G   TTGATTTTTTAAAAGTTCTAAGGGACAGTGTAGCTTACAAAATCGTGTACGTACTTCGTAATTTATATCTATTTTTATTTTTGATTAATGTGTCAAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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