SE2850695

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9700
  • Sorghum bicolor
  • SE2850695
  • PIF/harbinger
  • To2
  • chromosome_1:72406626-72407109
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAGATTTCGGATTTCGGTACTGTAGCACTTTCGTTTGTTTGTGACAAATATTATCCAATTATAGACTAACTAGGATCAAAAGATTCATCTCGCGATTTCCAGCTAAACTGTGTAATTAGTTTTTGCTTTCGTCTATATTTAATGCTTCATGCATGTGCCGCAAGATTCGATGTGACAGGGAATCTTGAAAACTTTTTGCTTTTTGGTGTGAACTAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TA   C                 AGA   CG  TT    T  T      C          TTG           A         A      C    A           A     -       CA                        C                               C GC               A        T     CT      -----       TGT        GCC
  AGG CTTGTTTAGTTCCGAAA   TTT  GA  TCGG AC GTAGCA TTTCGTTTGT   TGACAAATATT TCCAATTAT GACTAA TAGG TCAAAAGATTC TCTCG CGATTTC  GCTAAACTGTGTAATTAGTTTTTG TTTCGTCTATATTTAATGCTTCATGCATGTG C  AAGATTCGATGTGAC GGGAATCT GAAAA  TTTTGC     TTTTTGG   GAACTAAG   
  ||| |||||||||||||||||   |||  ||  |||| || |||||| ||||||||||   ||||||||||| ||||||||| |||||| |||| ||||||||||| ||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||| |||||  ||||||     |||||||   ||||||||    
  TCC GAACAAATCAAGGTTTT   AAA  TT  AGCT TG CATCGT AAAGCAAACA   ACTGTTTATAA AGGTTAGTA CTGATT ATCT AGTTTTCTAAG AGAGC GTTAAAG  TGGTTTGACACATTAATCAAAAAT AAAGCAGATATAAATTATGAGGTACGTACGC G  TTCTAAGCTACACTG CTCTTAGA CTTTT  AAAACG     AAAAACC   CTTGATTT   
AA   C                 AAA   CG  TT    T  C      A          TAA           C         C      A    G           C     T       -C                        A                               A AT               C        -     -T      TTTTA       ---        GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End