Plant MITE

SE2810696

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9701
Sorghum bicolor
SE2810696
Tc1/Mariner
St7
chromosome_5:49629139-49629400
TA
TACTCCCTCCATACCCATAAAAAAAGTCGTTTTGGACAA

Secondary structure and sequence

TSD TIR

5'

3'

                      A         T      GCTTTG    AAACATTGGGAATATAAATCATG      TTTTAAGTTGTTGAATTTGGAAATGTGAAAACCATATGAATAGATTTGTCTTGAAAAATACTT
TACTCCCTCCATACCCATAAAA AAGTCGTTT GGACAA      GGTC                       AATAAC                                                               
|||||||||||||||||||||| ||||||||| ||||||      ||||                       ||||||                                                               T
ATGAGGGAGGTATGGGTATTTT TTCAGCAAA CCTGTT      TCAG                       GTTTCA                                                               
                      C         T      GTTGTG    ---------------------AG      GATTGAAACTGAGGAACAAAAATATTTTTATAATAGTTTTTCACCATATACATATGAAAATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810696

TACTCCCTCCATACCCATAAAAAAAGTCGTTTTGGACAAGCTTTGGGTCAAACATTGGGAATATAAATCATGAATAACTTTTAAGTTGTTGAATTTGGAAATGTGAAAACCATATGAATAGATTTGTCTTGAAAAATACTTTCATAAAAGTATACATATACCACTTTTTGATAATATTTTTATAAAAACAAGGAGTCAAAGTTAGACTTTGGAGACTGTGTTGTTGTCCTAAACGACTTCTTTTATGGGTATGGAGGGAGTA

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