Plant MITE

SE2830697

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9702
Sorghum bicolor
SE2830697
hAT
Hat51
chromosome_6:52379590-52380186
TTGTCGCT
GCTGGCCCCTGGGGC

Secondary structure and sequence

TSD TIR

5'

3'

 TTGTC        CTG    ACAAAAC    TACC      C   ACCCGAAATACCTAGACCTGGACCCGCTGTACCCGAACCCGTTGTACCTGAACTCTAGTTCGGATAGTGAATGTTAAAACCTGAATTTATTTTGGGTAAATCGGATAACATATCCCGGTACCCGAAGTACCTGGAGGCCTGGATTATTTTGTTCTTGTGTGAAGCAAGCACTGTTGTGATGGCAAGTAGCAAACTTGATCTTTGCTCTTGTATCTTGTCAGTAGTAAGTAGTCAGTATCTCAGTACTTATCGTGGTTTG
      GCTGGCCC   GGGC       CCGA    CGAACC CGA                                                                                                                                                                                                                                                                   
      ||||||||   ||||       ||||    |||||| |||                                                                                                                                                                                                                                                                   C
      TGATCGGG   CCCG       ATGC    CCATTG GGC                                                                                                                                                                                                                                                                   
CGCTGT        --A    ------C    ----      -   GTTTCAAGCCCAGCCTATCAAGCCCAAAAGTTTTCAAGCCCATTACTCTTAACAATGGGTTTTTGTCGGGGTTTTTTGATGATGGGCATCCAAGCCCATGGGTGTTTAAGCCCAAGCCCAAGCCCATATGGGTTTTGTATATTTTAGTATCGTCTTCACTATTGTAGTATCTTAAAACGTGTCTTATCTACTATTGAGTAAGACATTCTCTATTTCCTTGTTCAAGTTTGATACTGCGTTAGTTCAAAAATTGGCTCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830697

TTGTCGCTGGCCCCTGGGGCACAAAACCCGATACCCGAACCCCGAACCCGAAATACCTAGACCTGGACCCGCTGTACCCGAACCCGTTGTACCTGAACTCTAGTTCGGATAGTGAATGTTAAAACCTGAATTTATTTTGGGTAAATCGGATAACATATCCCGGTACCCGAAGTACCTGGAGGCCTGGATTATTTTGTTCTTGTGTGAAGCAAGCACTGTTGTGATGGCAAGTAGCAAACTTGATCTTTGCTCTTGTATCTTGTCAGTAGTAAGTAGTCAGTATCTCAGTACTTATCGTGGTTTGCACCTCGGTTAAAAACTTGATTGCGTCATAGTTTGAACTTGTTCCTTTATCTCTTACAGAATGAGTTATCATCTATTCTGTGCAAAATTCTATGATGTTATCACTTCTGCTATGATTTTATATGTTTTGGGTATACCCGAACCCGAACCCGAATTTGTGGGTACCCGAACCTACGGGTAGTAGTTTTTTGGGGCTGTTTTTGGGTAACAATTCTCATTACCCGAACTTTTGAAAACCCGAACTATCCGACCCGAACTTTGCGGGTTACCCGTACGCCCAGGGCTAGTTGTCGC

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