SE2850698

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9703
  • Sorghum bicolor
  • SE2850698
  • PIF/harbinger
  • To49
  • chromosome_1:51729975-51730326
  • TAA
  • AGGCCCTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C         TTTCCCACCAA         CATCCA  C     -AATCT     CAC   CAT   ---    TAAATGTAGATAAAAAAATAAACTAATTACACAGTTTAGTTGAGAATCACGAGACGAATCTTTTAAGCCTAGTTACTCCATGATTAGCCTTAAGTGCTA
  AGG CCTGTTTAG           AAAATTTTT      TC CATCG      TTGGA   ATG   GGA   ACAT                                                                                                   
  ||| |||||||||           |||||||||      || |||||      |||||   |||   |||   ||||                                                                                                   C
  TCC GGACAAATC           TTTTAAAAA      AG GTAGC      AGCCT   TAC   CCT   CAAA                                                                                                   
AA   C         -TTACACCTAC         ACCCAC  T     CTACAC     TCC   AGC   TCC    AATCTTTGATTATTTTTTTGTTTAATGTATCGAGCAGTCCTTTGACGTTCTGTTTAAATAATTCGTATTAATTAGACAGTAATCGTATACACCCAATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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