Plant MITE

SE2850699

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9704
Sorghum bicolor
SE2850699
PIF/harbinger
To71
chromosome_4:16629765-16630094
TAA
AGGGCACTCCCAATGCTAGAAACTACATG

Secondary structure and sequence

TSD TIR

5'

3'

TA                T     - TA    T   TTATATACTTATTAATTTCTATAGACACTATGTATAGAAACTATGGTCTCAATGGATAGTTTCTATATAATAATTTGTTATCCAATCACATTCATTCTCTCTCCATTCTCAACCAATCATATCACTTCAT
  AGGGCACTCCCAATGC AGAAA C  CATG AGT                                                                                                                                  
  |||||||||||||||| ||||| |  |||| |||                                                                                                                                   
  TCCCGTGAGGGTTACG TCTTT G  GTAT AAA                                                                                                                                  
AA                -     A TC    G   GATATCTGTAATTAATACCATGGTGAATTCGTAAAACGACTACACCGTTCCATCAATAACTTCTCTCTCTCGTTTTTTTAGTATCTTTGACCCAGATTGAATCTTTGGTACAGATGCGCTTTAGGTTCTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850699

TAAGGGCACTCCCAATGCTAGAAACTACATGTAGTTTATATACTTATTAATTTCTATAGACACTATGTATAGAAACTATGGTCTCAATGGATAGTTTCTATATAATAATTTGTTATCCAATCACATTCATTCTCTCTCCATTCTCAACCAATCATATCACTTCATGTCTTGGATTTCGCGTAGACATGGTTTCTAAGTTAGACCCAGTTTCTATGATTTTTTTGCTCTCTCTCTTCAATAACTACCTTGCCACATCAGCAAAATGCTTAAGTGGTACCATAATTAATGTCTATAGAAAGTATGCTGATTTCTGCATTGGGAGTGCCCTAA

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