SE2850707

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9712
  • Sorghum bicolor
  • SE2850707
  • PIF/harbinger
  • To4
  • chromosome_8:51514635-51514882
  • TAA
  • AGGCCTTGTTCAGTTGCCAAATTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          C    -----------      TT     GTTT     ---   TGT  --- ACTTTCGTTTGTATTTGATAAAAAATGTCCAATCATGAACTAACTAGGTTTAAAAGATTCGTCTCGTAAAT
  AGGCCTTGTT AGTT           GCCAAA  TTTTT    TCGGA   TAC   AG   C                                                                       
  |||||||||| ||||           ||||||  |||||    |||||   |||   ||   |                                                                        
  TCCGGAACAA TCAA           CGGTTT  AAAAG    TTCTA   AGC   AG   A                                                                       
AA          A    AGGTTTTTCAT      TT     ----     AAG   ---  TGT GCTTAGAATGCCATTGACGTACTTCGTAATTTATATTTGTTTTTTTTTTGATTAATGTGTCAAACGGACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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