SE2850708

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9713
  • Sorghum bicolor
  • SE2850708
  • PIF/harbinger
  • To4
  • chromosome_3:2249050-2249296
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G    C                 TTTTCATATTCCCCAT    TCGAATCTTGTGGCACATGCATGAAGCACTAAATATAAATAAAAAATAACTAATTACACAGTTTACCTGTAATTT
  AGGCCTTGTTTA TTCC AAAATATTTTGCAAAAT                CACA                                                                           
  |||||||||||| |||| |||||||||||||||||                ||||                                                                            
  TCCGGAACAAAT AAGG TTTTATAAAATGTTTTA                TACT                                                                           
AA            G    -                 ----------------    TGTTATCGTGAAAATAAACAAAAACTATTTATAATAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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