Plant MITE

SE2850709

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9714
Sorghum bicolor
SE2850709
PIF/harbinger
To33
chromosome_7:56754010-56754220
GCT
CGAGAGAAAGTTATTTTTGCCCTTAAGGGCATGTGCTTCCACTCTCTCTACCACTGGATTCGCATTGAAAAGTGTGCAAACACACATCTCAATGCG

Secondary structure and sequence

TSD TIR

5'

3'

  GCTAAAA    A AA    A                         C                             A                       T   AA
         CGAG G  AGTT TTTTTGCCCTTAAGGGCATGTGCTT CACTCTCTCTACCACTGGATTCGCATTGA AAGTGTGCAAACACACATCTCAA GCG  
         |||| |  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||   
         GCTT C  TCAA AAAAACGGGAGTTCCCGTATACGAG GTGAGAGAGGTGGTGACCTAAGCGTAACT TTCACATGTTTGTGTGTAGAGTT CGT  
AGCAAAATC    G -G    A                         A                             C                       T   CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850709

GCTAAAACGAGAGAAAGTTATTTTTGCCCTTAAGGGCATGTGCTTCCACTCTCTCTACCACTGGATTCGCATTGAAAAGTGTGCAAACACACATCTCAATGCGAATCTGCTTTGAGATGTGTGTTTGTACACTTCTCAATGCGAATCCAGTGGTGGAGAGAGTGAGAGCATATGCCCTTGAGGGCAAAAAAAACTGCGTTCGCTAAAACGA

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