SE2850710

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9715
  • Sorghum bicolor
  • SE2850710
  • PIF/harbinger
  • To2
  • chromosome_10:43266278-43266529
  • CAC
  • GGCCTTGTTTACTTCCAAAAAATTTTGCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAC           C    -               ATAG   --  GT   ACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGTACTAATAACTAGGCTCAAAAGATTCGTCTCGCAAATTATAG
   GGCCTTGTTTA TTCC AAAAAATTTTGCAAA    GAA  TA  AGC                                                                               
   ||||||||||| |||| |||||||||||||||    |||  ||  |||                                                                               A
   CCGGAACAAAT AAGG TTTTTTAAAACGTTT    ATC  AG  TTT                                                                               
CAC           C    A               ----   AA  --   AAGGGGCAGTGTAGCTTAGAACGCCGTGTACGTACCTCATAATTTATATTTATTTTTATTATTGATTAACGTATCAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3