Plant MITE

SE2850712

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9717
Sorghum bicolor
SE2850712
PIF/harbinger
To2
chromosome_3:15356833-15357081
TAA
AGGCCTTGTTTAGTTCCCAGAAATTTTTGCAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TA                 C         T CA     TTTCACATTCCC    ACATCGAATCTTTAGACGCATGCATGAAGTATTAAATATAGATGAAAATAAAAACTAATTGTACAGTTTGGTCGAA
  AGGCCTTGTTTAGTTCC AGAAATTTT G  AAATT            CGTC                                                                            
  ||||||||||||||||| ||||||||| |  |||||            ||||                                                                            A
  TCCGGAACAAATCAAGG TTTTTAAAA C  TTTAG            TATG                                                                            
AA                 C         - CC     -----------C    ACATCGTGAAAGCAAACATAAACTGTTTATAATAGATTAATATCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850712

TAAGGCCTTGTTTAGTTCCCAGAAATTTTTGCAAAATTTTTCACATTCCCCGTCACATCGAATCTTTAGACGCATGCATGAAGTATTAAATATAGATGAAAATAAAAACTAATTGTACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCTATAATTAGATAATATTTGTCAAATACAAACGAAAGTGCTACAGTATCGATTTCCCAAAATTTTTCGGAACTAAACAAGGCCTAA

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