SE2850716

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9721
  • Sorghum bicolor
  • SE2850716
  • PIF/harbinger
  • To21
  • chromosome_10:59286696-59286879
  • TAA
  • AGGCCCTGTTTGGTTCCCCTTGCTAAATTTTAGCTAGCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C                                     ----------------------       - C  TTTAGTAGCTAAAGTTCCAAACACATT
  AGG CCTGTTTGGTTCCCCTTGCTAAATTTTAGCTAGCTAA                      ACTTTAG T AC                           
  ||| |||||||||||||||||||||||||||||||||||||                      ||||||| | ||                            
  TCC GGACAAACCAAGGGGAACGATTTAAAATCGATCGATT                      ACTGATT C CT                           
AA   C                                     TTAATAAAATCGATGAGAACCC       A -  TGATTTGATAAAATCAAGGAAAATCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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