SE2850717

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9722
  • Sorghum bicolor
  • SE2850717
  • PIF/harbinger
  • To2
  • chromosome_3:8228130-8228594
  • TTA
  • AGGCCTGGTTTAGTTGGCAAAAAATTTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TT      G        GG     A    A  --TTTA   T        AC        T          AC            C  TG       A            A    ACA    ACA   -      C                  C                C        CAA C                A        T     T      ------------     AA
  AGGCCT GTTTAGTT  CAAAA ATTT GT      GGC ACTGTAGC  TTTCGTTT TATTTGACAA  ATTATCCAATCA GG  TAACTAG CTCAAAAGATTC TCTT   AATT   GAT AAACTG GCAATTAGTTTTTATTTT GTCTATATTTAATGCT CATGCATG   C AAAGATTCGATGTGAT GGGAATCT GAAAA TTTTGT            GAACT  
  |||||| ||||||||  ||||| |||| ||      ||| ||||||||  |||||||| ||||||||||  |||||||||||| ||  ||||||| |||||||||||| ||||   ||||   ||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||   | |||||||||||||||| |||||||| ||||| ||||||            |||||   
  TCCGGA CAAATCAA  GTTTT TAAA CG      CTG TGACATCG  AAAGCAAA ATAAACTGTT  TAATAGGTTAGT TC  ATTGATC GAGTTTTCTAAG AGAG   TTAA   CTG TTTGAC CGTTAATCAAAAATAAAA CAGATATAAATTATGA GTACGTAC   G TTTCTAAGCTACACTG CCCTTAGA CTTTT AAAACG            CTTGA  
AT      A        -A     A    A  TTTTAG   -        AA        C          CA            A  TG       C            C    CAG    -AG   G      A                  A                A        ACA A                C        -     T      TTTTAAAAAACC     TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End