Plant MITE

SE2850718

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9723
Sorghum bicolor
SE2850718
PIF/harbinger
To3
chromosome_3:17919658-17919905
TTA
AGGCCTTGTTTAGATCCAA

Secondary structure and sequence

TSD TIR

5'

3'

TT             ---      TTTTT           -     TGT   G TTTTATTTTTATTTGATAAACATTGTCCAATCATAAAGTAACTAGGTTTAAAAGATTCATCTCACGATATACA
  AGGCCTTGTTTAG   ATCCAA     TTGGGAATTTT GGCAC   AGC T                                                                         
  |||||||||||||   ||||||     ||||||||||| |||||   ||| |                                                                         A
  TCCGGAACAAATC   TGGGTT     GGTTTTTGAAA GTTCT   AGG C                                                                         
AT             AAG      --TTT           A     AAA   - AGTGTAGCTTAGAACGCCGTGTACGTAACTCGTAATTTATATCTACTTTTGTTTTTGATTAACGTATCAAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850718

TTAGGCCTTGTTTAGATCCAATTTTTTTGGGAATTTTGGCACTGTAGCGTTTTTATTTTTATTTGATAAACATTGTCCAATCATAAAGTAACTAGGTTTAAAAGATTCATCTCACGATATACAAGCAAACTATGCAATTAGTTTTTGTTTTCATCTATATTTAATGCTCAATGCATGTGCCGCAAGATTCGATGTGACGGAAAATCTTGAAAAGTTTTTGGTTTTTGGGTGAACTAAACAAGGCCTTA

Copy Cancel