Plant MITE

SE2850720

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9725
Sorghum bicolor
SE2850720
PIF/harbinger
To32
chromosome_3:9157684-9157839
TTA
AGGGCTAATTTGGAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TT    C            ---------AAGG    -----   -ACA       AT     ACCC      AA  ACTA       AT
  AGGG TAATTTGGAAGC             GGGA     GGC    TCCAGGG  GGAAA    TCCATG  GA    GATGGTT  
  |||| ||||||||||||             ||||     |||    |||||||  |||||    ||||||  ||    |||||||  T
  TCCC ATTAAACCTTTG             CCCT     CTG    AGGTCCC  CCTTT    AGGTAC  CT    TTATTAA  
AT    A            AGTTTTAGAGGAA    AGGGA   AAAA       AC     ----      CC  ----       AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850720

TTAGGGCTAATTTGGAAGCAAGGGGGAGGCACATCCAGGGATGGAAAACCCTCCATGAAGAACTAGATGGTTATTAAAATTATTTCCCCATGGATTTCCCACCCTGGAAAAAGTCAGGGATCCCAAGGAGATTTTGAGTTTCCAAATTAACCCTTA

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