Plant MITE

SE2850725

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9730
Sorghum bicolor
SE2850725
PIF/harbinger
To14
chromosome_9:3560411-3560659
TTA
AGGCCTTGTTTAGTTCCCAAAAGATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT       G         C   AGA           -------------TTCTCA    T TCATCACATCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGATAAAAGAAATAACTAATTACACA
  AGGCCTT TTTAGTTCC AAA   TTTTGCAAAAT                   GATT C                                                                      
  ||||||| ||||||||| |||   |||||||||||                   |||| |                                                                       
  TCCGGAA AAATCAAGG TTT   AAAACGTTTTA                   AAAC A                                                                      
AT       A         -   AAA           TCCTTATCATCGTAAAAAC    - TAAACTGTTTATAACAGGCTAGTACCTGATTGATCCGAGTTCTCTAAGCAGAGCGTTTAATGTCCATCTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850725

TTAGGCCTTGTTTAGTTCCCAAAAGATTTTGCAAAATTTCTCAGATTTCTCATCACATCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGATAAAAGAAATAACTAATTACACAGTCTACCTGTAATTTGCGAGACGAATCTCTTGAGCCTAGTTAGTCCATGATCGGACAATATTTGTCAAATACAAACAAAAATGCTACTATTCCTATTTTGCAAAAAAATTTGGAACTAAAAAAGGCCTTA

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