SE2850728

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9733
  • Sorghum bicolor
  • SE2850728
  • PIF/harbinger
  • To1
  • chromosome_1:56570077-56570325
  • TAA
  • AGGCCTTGTTTAGATACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               A  CCTAAAAACCCAAAACTTTA       - CCCGTCACATCGAATCTTGCGGCACATACATGAAGTATTAAATATAGATAAAAAGAATAACTAATTGCACAGTTTAC
  AGGCCTTGTTTAGAT CA                    CAAGATT C                                                                             
  ||||||||||||||| ||                    ||||||| |                                                                             C
  TCCGGAACAAATCTA GT                    CTGTGAC T                                                                             
AA               C  ---TTTTCAAAAACCTAAAA       A CGTAAAAGCAAAAATAAACTGTTTGTAACAGATTAATACCTCATTGATACGAATTTTCTAAGCAGAGCACTAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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