Plant MITE

SE2850729

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9734
Sorghum bicolor
SE2850729
PIF/harbinger
To2
chromosome_4:9765399-9765646
TAA
AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA            G   GTGAAGAAAAAAATT    G   CTG    ACTTTCGTTGTTTGTGGTAATTATTGTCCAACCATGGACTAAGTAGACTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTG
  AGGCCTTGTTTA TTC               TTGC ACA   TAGC                                                                                     
  |||||||||||| |||               |||| |||   ||||                                                                                      
  TCCGGAACAAAT AAG               TGGG TTT   TTAG                                                                                     
AA            G   --------------G    -   ---    ATTTTAAAAAGTTCTAAGAGGCAGTGTAGTTTAGAAATCTGCGTATGTACCTTATAATTTATATATGCTTTTATTTTTGATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850729

TAAGGCCTTGTTTAGTTCGTGAAGAAAAAAATTTTGCGACACTGTAGCACTTTCGTTGTTTGTGGTAATTATTGTCCAACCATGGACTAAGTAGACTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGTAATTAGTTTTTATTTTCGTATATATTTAATATTCCATGTATGCGTCTAAAGATTTGATGTGACGGAGAATCTTGAAAAATTTTAGATTTTTGGGTGGAAGTAAACAAGGCCTAA

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