SE2850730

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9735
  • Sorghum bicolor
  • SE2850730
  • PIF/harbinger
  • To4
  • chromosome_1:6229359-6229602
  • TAA
  • AGGCCTTGTTTAGTTGGCGAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      T        GG         TTGGTTTTGGGT      G  --  TTCGTTTGTATTTGATAATTGTTGATTTATTGTCCAACCATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAAT
  AGGCCT GTTTAGTT  CGAATTTTT            ACTGTA CA  CT                                                                            
  |||||| ||||||||  |||||||||            |||||| ||  ||                                                                            T
  TCCGGA CAAATCAA  GTTTAAAAA            GTTCTA AG  GC                                                                            
AA      C        GG         ------------      -  GG  GGTGTAACTTAGAACGACGTGTACGTACCTCGTAATTTATATCTATTTTTTTATTGATTGACGTGTGAAATGGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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