SE2850744

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9749
  • Sorghum bicolor
  • SE2850744
  • PIF/harbinger
  • To49
  • chromosome_4:64626057-64626409
  • TAA
  • AGGCCTTGTTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA           T    CCCACCCCAAA        -CACCCA   A       C   AGACAC    ---AT        -AA    A       GAATAA          C      GT       CA          CTT                   G      CTTAAGTGCT   -   A
  AGGCCTTGTTT AGTT           AAAGTTTT       TCA ATCGAAT TTT      ATGT     GGAGTATT   ATAT GATAAAA      ACTAATTACA AATTTG  TGGAAAT  TGAGACGAAT   TTAAGCCTAGTTAGTCCAT ATTAGC          ACA GTA 
  ||||||||||| ||||           ||||||||       ||| ||||||| |||      ||||     ||||||||   |||| |||||||      |||||||||| ||||||  |||||||  ||||||||||   ||||||||||||||||||| ||||||          ||| ||| C
  TCCGGAACAAA TCAA           TTTTAAAA       AGT TAGCTTA AAA      TACA     CCTCATAA   TATA TTATTTT      TGATTAATGT TTGAGC  ACCTTTG  GCTCTGCTTA   AATTCGGATTAATTAGGTA TAATCG          TGT CAT 
AA           -    ---CCTCATGC        AACCGAG   G       C   GCATCC    GCCTT        GCC    A       ----TG          A      AA       AC          AAT                   G      ----------   A   C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End