SE2850745

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9750
  • Sorghum bicolor
  • SE2850745
  • PIF/harbinger
  • To1
  • chromosome_9:54639584-54640350
  • TTA
  • TAGGCCTTGTTTAGTTGGGGAAAAAATTTGGGTTTGGCTACTGTAACACTTTCG

Secondary structure and sequence

TSD    TIR
5'



3'
T                G G      A         G         A        TTTG       C         CCAATC           TA ATC                                               A   ATA   A                            CTCA       GATGTGATGGGGAATCTTGAAAAAATTAGCAAATTTTGGGAACTAAACAAGGCCTTAGTGATGACACTTGCCGATGGAGCTCAATACCGTGACATATTAAGGCCTTGTTTAGTTCCCAAAATTTTTGAGGTTTTGACATTGTAGTACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAATTA
 TAGGCCTTGTTTAGTT G GAAAAA TTTGGGTTT GCTACTGTA CACTTTCG    TATTTGA AATTGTTGT      ATGGACTAACT  G   AAAAGATTCGTCTCGCAAATTATAGGTAAACTGTGCAGTTAGTTATT TTT   TTT TATTTATATTTAATGCTTCATGCATGTG    AAGATTC                                                                                                                                                                                               
 |||||||||||||||| | |||||| ||||||||| ||||||||| ||||||||    ||||||| |||||||||      |||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||| ||||||||||||||||||||||||||||    |||||||                                                                                                                                                                                               G
 ATCCGGAACAAATCAA C CTTTTT AAACCTAAA CGATGACAT GTGAAAGC    ATAAACT TTAATAATA      TATCTGATTGA  C   TTTTCTAAGCAGAGCGTTTAATGTCTATTTGACACGTTAATCAATAG AAA   AAA ATAGATATAAGTTACGAAGTACGTACAC    GCGTTCT                                                                                                                                                                                               
A                G G      A         G         C        CGAA       A         -AATAA           TC GAA                                               A   ---   -                            ---A       AAGCTACACTGTCCTTTAGAACTTTTTTAAACTCTTGATTTGTTCCGGAATCAAGTGGGGTTTTCGGTTTTTGAAAAGTTCTAAGGGGCAGTGTAGTTTAGGACGCCGTGTACGTACCTCATAATTTATATCTATTTTTGTTTTTGATTAACGTGTCAAACAGACATTTAGTGTTCTACATAGAAAACTCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End