SE2850747

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9752
  • Sorghum bicolor
  • SE2850747
  • PIF/harbinger
  • To16
  • chromosome_5:54416070-54416370
  • TAA
  • AGAGCACTCACAATGCAAGACTCTATCACAGAGTCCAAAACAATTAATTACATATTATTTATGGTATTTTGCTGATGTGGCAGCATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A                                C  A   A       C                                      --A    --- G  A -A       A  ATAAGACTCCAAGTCTTATTTAGATTCTAAGTCCAC
  AG GCACTCACAATGCAAGACTCTATCACAGAGTC AA ACA TTAATTA ATATTATTTATGGTATTTTGCTGATGTGGCAGCATATT   TTGA   A AA G  GGTAGAA AA                                    
  || |||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||   ||||   | || |  ||||||| ||                                     
  TC CGTGAGTGTTACGTTCTGAGATAGTGTCTCAG TT TGT AATTAAT TATAATAAATACCATAAAACGACTACACCGTCGTATAA   CCGT   T GT T  GTCTGAG AT                                    
AA  C                                A  C   G       A                                      ATC    GAG -  - AC       -  AGCATCTCAGATTTCAATAAATAATGGAGCTTGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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