Plant MITE

SE2810752

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9757
Sorghum bicolor
SE2810752
Tc1/Mariner
St7
chromosome_1:61107181-61107442
TA
TACTCCCTCCGTATAGGATTTAGAAGTCGTTTAGGACAG

Secondary structure and sequence

TSD TIR

5'

3'

                                A      TGACAC    TCCA     ---CAAC     CCTCT --           ---- A   TTAGAAAAAAATGATATATGTATACTTTTATGAAAGTATTTT
TACTCCCTCCGTATAGGATTTAGAAGTCGTTT GGACAG      GGTC    AAACA       TTTGA     T  ATTTTTATAAA    A TAT                                          
|||||||||||||||||||||||||||||||| ||||||      ||||    |||||       |||||     |  |||||||||||    | |||                                          T
ATGAGGGAGGCATATCCTAAATCTTCAGCAAA CCTGTT      CCAG    TTTGT       TATTT     A  AGTTATTGAAA    A ACA                                          
                                A      CCAAAC    ----     AACGTTA     ----- AT           ATTT -   ACTCAAATGTTTACACTTTTAATATACTTATCTAAATAGAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810752

TACTCCCTCCGTATAGGATTTAGAAGTCGTTTAGGACAGTGACACGGTCTCCAAAACACAACTTTGACCTCTTATTTTTATAAAAATATTTAGAAAAAAATGATATATGTATACTTTTATGAAAGTATTTTTCAAGATAAATCTATTCATATAATTTTCACATTTGTAAACTCAACAATTTAAAAGTTATTGATAATTTATATTGCAATGTTTGACCCAAACCTTGTCCAAAACGACTTCTAAATCCTATACGGAGGGAGTA

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