SE2850755

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9760
  • Sorghum bicolor
  • SE2850755
  • PIF/harbinger
  • To33
  • chromosome_3:68749936-68750151
  • GCT
  • GAACGCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTGGGTTCG    ---     TTTT              -A    C  A              C               A                            A  AGA
          GAAC   GCGGT    TTTTTTTTGCCCTT  AGGG AT TGCCCTCACTCTCT ACTCATTGGATTCGC TTGAGAAGTGTGCAAACACACATCTCAA GC   
          ||||   |||||    ||||||||||||||  |||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||    
          CTTG   CGCCA    AAAAGAAACGGGGA  TCCC TA ACGGGAGTGAGAGG TGGGTAACCTAAGCG AACTTTTCATACGTTTGTGTGTAGAGTT CG   
              GGT     TTTC              AC    A  C              A               A                            A  CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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