SE2850758

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9763
  • Sorghum bicolor
  • SE2850758
  • PIF/harbinger
  • To19
  • chromosome_1:54510329-54510545
  • TAA
  • AGGGGGTGTTTGGGACTGCTCCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                        TCCACGTTTTTT     C      CGTTTTTT    AAACGGTTTCAGCTCCACGCACTCAGTTCGAGAAAAAAGGGTAGAGTTGTGAGA
  AGGGGGTGTTTGGGACTGCTCCGC            AGCTC GCTCCA        AGCC                                                      
  ||||||||||||||||||||||||            ||||| ||||||        ||||                                                       
  TCCCCCACAAACCCTGACGAGGTG            TTGAG CGAGGT        GAGG                                                      
AA                        -----------C     A      ----ATTT    CAGCACCTCGTCGAGGTGTTTTTTGACCTCAAACACCTCATGGAGAAATCCACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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