Plant MITE

SE2850761

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9766
Sorghum bicolor
SE2850761
PIF/harbinger
To15
chromosome_2:11786430-11787075
TTA
AGAGCATCTCCAACAGTTATGCAATTGGAATTTGCCATTTGTTGGAATTTGCCAAGTCCCT

Secondary structure and sequence

TSD TIR

5'

3'

TT                             ATT   C    GTT             TCC  AAACGTT    CAAA   AAAATAAGTCCATCTCCAAGTGTTTGGCATTTTTGACTTGGCATTTCCCAAAAATAGTGGACCCAACTATTTTTGTCCGGGGTCTTTTTTTGTTTGGCGCGCTTCGCGCGATATTTTTCCTCTGCGCGGGAATTTCCGTCGCCCGTCGTCGCCAGTCCACGAAGTCGTAAGTCACCGTTGTTTCTGTGAATCGCGGCCTCCCGGTCCGCCAGTCCACAAAGTCGCAGTTCGCCAGAGTTCCGTCA
  AGAGCATCTCCAACAGTTATGCAATTGGA   TGC ATTT   GGAATTTGCCAAG   CT       TTGC    GGA                                                                                                                                                                                                                                                     
  |||||||||||||||||||||||||||||   ||| ||||   |||||||||||||   ||       ||||    |||                                                                                                                                                                                                                                                     C
  TCTCGTAGAGGTTGTCAATACGTTAACCT   ACG TAAG   CTTTAAATGGTTT   GA       AATG    AGA                                                                                                                                                                                                                                                     
AT                             GAT   -    -AT             TTA  -ATTTTT    ----   GGTTGTCAATACGTAAACTGAATACGTAAAACCGTTTGAACCGTAAACTACCTGGTTTGAACCGTAAAAACGTATCCGTGTTACCGAACCGTAAAAACTATAAGGCTCAAAGTACCTGAGGAACAGCACGCGCTGGAGGGGTGCGCGACGCCATCAAAGGGCGCTCCTGAGGAGGAGGGGCGCGCTTGAGAAGAAAGGGCGCGCTACACTTGAGACGCTGGATGCTGAAGCACCTGATGCCCGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850761

TTAGAGCATCTCCAACAGTTATGCAATTGGAATTTGCCATTTGTTGGAATTTGCCAAGTCCCTAAACGTTTTGCCAAAGGAAAAATAAGTCCATCTCCAAGTGTTTGGCATTTTTGACTTGGCATTTCCCAAAAATAGTGGACCCAACTATTTTTGTCCGGGGTCTTTTTTTGTTTGGCGCGCTTCGCGCGATATTTTTCCTCTGCGCGGGAATTTCCGTCGCCCGTCGTCGCCAGTCCACGAAGTCGTAAGTCACCGTTGTTTCTGTGAATCGCGGCCTCCCGGTCCGCCAGTCCACAAAGTCGCAGTTCGCCAGAGTTCCGTCACGCGCCCGTAGTCCACGAAGTCGTAGGTCGCAGAGTTCACATCGCGCGGGAAAGAAGAGTTCGCGCGGGGAGGAGGAGTCCTCGCGGGAAACTACCGCAGCGCGTGGGGAGGTCGCGCACGACAAGGAGTCCATGAAACTCGGAATATCAAAAATGCCAAGCCATTGTGCCTATGCAAAAATGCCAAGTTTGGTCCATCAAATGCCAAGTTTGCCAAAATGCATAAGTCAAATGCATAACTGTTGGAGAGTAATTTTTAAGATTTTTGGTAAATTTCTAGAATGCATAGTCCAATTGCATAACTGTTGGAGATGCTCTTA

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