Plant MITE

SE2850762

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9767
Sorghum bicolor
SE2850762
PIF/harbinger
To68
chromosome_1:2363941-2364545
TAA
AGAGCATCTCCAAGGGCTTTCCATTCTCAGCTTTGCATTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA                    C  TTC             T AGGG          G      ATGAGTTTGCAAAGTTCCCAAAGGGGGGATCTCCAACCGTTTTGCATTCTCATCAAGTCCTTTCCCGAAATTTTTTCCCACGCGCCATCCGGCCAAAAAATTTCGCGTGCAGTGCCAGATCGCGATGAAGATGTTGTGTGGCGGCGGCGAAGGGAGCTGTCGCGCGATGAAGAAGCCGAGCGATGAAGAAGCCGCGCGATGAAGAAGTCGCGTGGCGGCGGCGGAGGGAGATCGCGGGGG
  AGAGCATCTCCAAGGGCTTT CA   TCAGCTTTGCATT C    GATTTGCAAA TTGCAA                                                                                                                                                                                                                                                
  |||||||||||||||||||| ||   ||||||||||||| |    |||||||||| ||||||                                                                                                                                                                                                                                                G
  TCTCGTAGAGGTTCCCGAAA GT   AGTTGAAACGTAA G    TTAAACGTTT TTTCTC                                                                                                                                                                                                                                                
AA                    C  -TT             C --GG          -      ATCTTTTGTGGAGAGGTTACCGAAACGTTTACTCCAAACGTTAAACCATTCCAAACGTTTATCTCCACCTTTGAAACGTATATACGTTTGGAGGAGTTCCGAAACGTAAACCCTAAGCGTTCCTTAAGCCAGGCGGTGCATCCGGCGAGCCAGGGGAGCGCGCTTTATAAAACCCGCCGTAGCGCCAACGGGCTGAGCCGCGCGGTTTCCTGAGGGCGCGCTAAATAGAGGGGGGGGGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850762

TAAGAGCATCTCCAAGGGCTTTCCATTCTCAGCTTTGCATTTCAGGGGATTTGCAAAGTTGCAAATGAGTTTGCAAAGTTCCCAAAGGGGGGATCTCCAACCGTTTTGCATTCTCATCAAGTCCTTTCCCGAAATTTTTTCCCACGCGCCATCCGGCCAAAAAATTTCGCGTGCAGTGCCAGATCGCGATGAAGATGTTGTGTGGCGGCGGCGAAGGGAGCTGTCGCGCGATGAAGAAGCCGAGCGATGAAGAAGCCGCGCGATGAAGAAGTCGCGTGGCGGCGGCGGAGGGAGATCGCGGGGGGGGGGGGGGGGGAGATAAATCGCGCGGGAGTCCTTTGGCGCGCCGAGTCGGGCAACCGCGATGCCGCCCAAAATATTTCGCGCGAGGGGACCGAGCGGCCTACGTGGCGGACCGAATTCCTTGCGAATCCCAAATGCAAAGCCTTGAGGAGGTTTGCATATATGCAAAGTTTCCACCTCTATTTGCAAACCTTACCAAATTGCAAACCTCATTTGCAAAGCCATTGGAGAGGTGTTTTCTACTCTTTTTTGCAAATTGGGCAATGCAAAGTTGATTTGCAAAGCCCTTGGAGATGCTCTAA

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