SE2850764

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9769
  • Sorghum bicolor
  • SE2850764
  • PIF/harbinger
  • To7
  • chromosome_3:60036265-60036476
  • TTA
  • AGGCCAGTCTCAATGCATGTTTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  -       AGGA   - CAT    ATTAAATAGGGTGCCACATAAGCAAAATTGCTGACTTGGCAAGGTCATTAAATGAAGGAGTTTCAT
  AGGCCAGTCTCAATGCAT GTTTCAT    GTG T   GCAC                                                                  
  |||||||||||||||||| |||||||    ||| |   ||||                                                                  C
  TCCGGTCAGAGTTACGTA CAAAGTA    CTG G   TCAA                                                                  
AT                  T       ----   T ---    TGGTTCTGATATTTGATCCATTGGCTCGGTATTCTCAAAGTACCCCTACTTTGAGGAGAGAGTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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