Plant MITE

SE2850765

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9770
Sorghum bicolor
SE2850765
PIF/harbinger
To14
chromosome_2:60665350-60665596
TAA
AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TA               CCAAAAA     -   AAAC CACAATGTAGCACTTTCGTTTGTATGTGACAAATATTATCCAATTATAGACTAACTAGGCTCAAAAGATTTGTCTTGTAAATTACAGTTA
  AGGCCTTGTTTAGTT       ATTTG TCA    A                                                                                          
  |||||||||||||||       ||||| |||    |                                                                                           
  TCCGGAACAAATCAG       CCTTT AAA    C                                                                                          
AA               ----AAT     A   ---- ATTTTTAAAAGTTTAAAAGGCAGTGTAGCTTAGAATGCCGTGTATATATCTAATAATTTATGTCTATTTTTTTATTGATTAATATGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850765

TAAGGCCTTGTTTAGTTCCAAAAAATTTGTCAAAACACACAATGTAGCACTTTCGTTTGTATGTGACAAATATTATCCAATTATAGACTAACTAGGCTCAAAAGATTTGTCTTGTAAATTACAGTTAAACTGTATAATTAGTTATTTTTTTATCTGTATTTAATAATCTATATATGTGCCGTAAGATTCGATGTGACGGAAAATTTGAAAATTTTTACAAAATTTCCTAAGACTAAACAAGGCCTAA

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