Plant MITE

SE2850768

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9773
Sorghum bicolor
SE2850768
PIF/harbinger
To88
chromosome_7:58232532-58232896
TAA
AGAGCATCTCCAACAACTTGGTAAAATTCA

Secondary structure and sequence

TSD TIR

5'

3'

TA                       AAA    CTTGTCAAA    GA --   T -  AAGTTGCTAATTTGTTTAGCAAAAGAAAAAAGAATGTGTCTCCAATAAGTTGCTATTCTCACTTGGTAAAAATAGAGGATGACAGATAAAACCCGCTCACTTGGTAAAAGAATATGTGTCTCCAACAAGTTG
  AGAGCATCTCCAACAACTTGGTA   TTCA         TCTT  G  TTA A GC                                                                                                                                    
  |||||||||||||||||||||||   ||||         ||||  |  ||| | ||                                                                                                                                     
  TCTCGTAGAGGTTGTTGAACCAT   AAGT         TACG  A  GGA T GT                                                                                                                                    
AA                       --A    -------TG    -- TA   - G  TTAAACGATTTTCGTATTTTTAGGAGGAGGTTGTTGAGGAATAGAGTTGAACGATTTAAAGGGTTCAACGATAGGTCTCCAAAGATGACGACTTTAAACAGTTCAACGATAGGGTTCAACGATAGGGCTCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850768

TAAGAGCATCTCCAACAACTTGGTAAAATTCACTTGTCAAATCTTGAGTTATAGCAAGTTGCTAATTTGTTTAGCAAAAGAAAAAAGAATGTGTCTCCAATAAGTTGCTATTCTCACTTGGTAAAAATAGAGGATGACAGATAAAACCCGCTCACTTGGTAAAAGAATATGTGTCTCCAACAAGTTGCGCTCGGGATAGCAACTTGGGATAGCAACTTGACAAATTTCAGCAGTAGAAACCTCTGGATAGCAACTTGGGAAATTTAGCAAGTTGAGATAAGGAGTTGTTGGAGGAGGATTTTTATGCTTTTAGCAAATTTGGTAGGATAGCATGTTGAAATACCAAGTTGTTGGAGATGCTCTAA

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