Plant MITE

SE2850769

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9774
Sorghum bicolor
SE2850769
PIF/harbinger
To14
chromosome_10:49698354-49698601
TAA
AGGCCTTGTTTACTTCCAATTTTTTTTCGAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA            -C      TT T    -      ---AG     GT   ACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGTATTAACTAGGCTTAAAAGATTCGTCTCGCAAATTATA
  AGGCCTTGTTTA  TTCCAA  T TTTT CGAAAT     GAATA  AGC                                                                           
  ||||||||||||  ||||||  | |||| ||||||     |||||  |||                                                                            
  TCCGGAACAAAT  AGGGTT  A AAAA GTTTTA     TATAA  GGG                                                                           
AA            CA      TT T    C      AAAAG     -G   TAGTGTAGCTTAGAACGCCGTGTATGTATCTCGTGATTTATATCTATTTTCTTTATTGATTAATGTGTCAAATGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850769

TAAGGCCTTGTTTACTTCCAATTTTTTTTCGAAATAGGAATAGTAGCACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGTATTAACTAGGCTTAAAAGATTCGTCTCGCAAATTATAGGTAAACTGTGTAATTAGTTATTTCTTTTATCTATATTTAGTGCTCTATGTATGTGCCGCAAGATTCGATGTGATGGGGAATATGAAAAATTTTGCAAAATATTTTGGGAACTAAACAAGGCCTAA

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