Plant MITE

SE2850771

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9776
Sorghum bicolor
SE2850771
PIF/harbinger
To89
chromosome_2:4215350-4215593
TAA
AGGCCTTGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TA            GTTCCTTCCCAAA             ---    -----    TCTGTCACATTTTAGACACATGCATAAAGTATTAAATATAGATGACAACAAAAACTAATTATACAGTTTGTCTGTA
  AGGCCTTGTTTA             ATCTAAATTTTTT   GAAG     ATTC                                                                            
  ||||||||||||             |||||||||||||   ||||     ||||                                                                            A
  TCCGGAACAAAT             TAGGTTTAAAAAA   CTTT     TATG                                                                            
AA            -------------             AAA    TTATC    ACATCGTGAAAGCAAACATACACTGTTTATAACAAGTTAATATTTGATAGATCCGAATTTTCTAAGTAGAGCGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850771

TAAGGCCTTGTTTAGTTCCTTCCCAAAATCTAAATTTTTTGAAGATTCTCTGTCACATTTTAGACACATGCATAAAGTATTAAATATAGATGACAACAAAAACTAATTATACAGTTTGTCTGTAATTTGCGAGATGAATCTTTTAAGCCTAGATAGTTTATAATTGAACAATATTTGTCACATACAAACGAAAGTGCTACAGTATCTATTTTTCAAAAAAAAATTTGGATTAAACAAGGCCTAA

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